PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.248
Common NameAMTR_s00002p00225810, LOC18429253
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 656aa    MW: 70714.9 Da    PI: 5.763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.248genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12466511454
                                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                               +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  evm_27.model.AmTr_v1.0_scaffold00002.248 466 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 511
                                               799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4669245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-15465516No hitNo description
SuperFamilySSF474597.2E-19465532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-10466511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-20466533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-16468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00152506535No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MAPPQPAGLW SDDNNAMLEA FMAAADLPIP STPSTWFDPS PSNATTTHTT TSSITTQGAN  60
ATSPSQDSLQ HRLQSLIETA HEPWTYAIFW QPSLPSQALA WADGYYKGEP LKLARPPAPP  120
SAEQINRKLV LRQLHSLISQ TSSATNDESV DEEVTDTEWF YLVSMMQSFA GPTALPSHSF  180
FSGAPVWLAG GGRLATCPCE RARQAVAFGL QSLVCIPTSS GVVELGSTEA VPHNPELVRG  240
AQALFTWPDP HAQHDDPSLW LTDPAPEPPE PAKTTTQTPP VTKPVPPPPP PPPVVENTSN  300
STVTQTAFSL NFSDFGFEGL ATNNQRGALN TYEDSHRDGK VGNLQPCKPE SGEILSFGGG  360
NGGGNSMSRG GSSSGLMGRV DEKRGGRLGP TMGPTRQNGG VDEGILSFSS GVVLQSELKS  420
GADSDHSDLE ASVREVESSR IVDTAAERRP RKRGRRPANG REEPLNHVEA ERQRREKLNQ  480
RFYALRAVVP NVSKMDKASL LGDAIAYINE LRGKLQGLES ENDELQTQVE ALKKKESQLF  540
NGSLKSQALS GDSDLKAHST HSSANSGKYP GLEIEVKILG WEAMIRIQSN KQNHPAARFM  600
VALKDLDLEV HYASVSVVKD LMIQQATVKM TSRIYTQDQL SAALYSKVAD IGSVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-496523944225Transcription factor MYC3
4ywc_A1e-496523944225Transcription factor MYC3
4ywc_B1e-496523944225Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447455RRPRKRGRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838603.10.0PREDICTED: transcription factor MYC2
RefseqXP_011621529.10.0PREDICTED: transcription factor MYC2
SwissprotQ336P51e-167MYC2_ORYSJ; Transcription factor MYC2
TrEMBLW1NU900.0W1NU90_AMBTC; Uncharacterized protein
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37331224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-72bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]